Next week, we will be having a Molecular Dynamics (MD) workshop (see http://simbios.stanford.edu/calendar.htm for details) for three main pieces of Folding@home-related software, namely OpenMM (the GPU acceleration code behind the FAH GPU client), MSMbuilder (the software used to parallelize calculations over all of Folding@home, i.e. how to make all the individual donors' calculations work together) and OpenMM/Zephyr (a tool intended to make molecular dynamics simulation easier for non-experts, built from the accelerated OpenMM codebase).
We're very excited about not just making the key software pieces that drive FAH available to other researchers, and moreover, we're working hard to teach others how they work and how to use them efficiently.
You can learn more about these projects at their simtk.org web pages as well:
OpenMM: http://simtk.org/home/openmm
Zephyr: https://simtk.org/home/zephyr
