Don't forget that while the main links will be the same (http://folding.stanford.edu is still the main site url), don't rely on other links being the same as they were before. For downloads, check the download page on the web site for the new locations.
In general, the new site is looking good and we've gotten a positive response from donors in general. Check out the translation pages and how they work -- *any* page can be translated just by hitting the language on the left. In time, we'll improve the existing translations and add more translations from the old pages.